PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000139807
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family TCP
Protein Properties Length: 222aa    MW: 24323.6 Da    PI: 7.1976
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000139807genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP112.84.7e-3558152489
            TCP   4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg.........k 89 
                     ++ + ++hTkv+gR+RRvR++a caar+F+L++eLG+ +d++tieWLl+ a+p+i+++tg+++ +a+  ++ s s+s++ +s +         +
  MDP0000139807  58 SRRNTRDRHTKVNGRGRRVRMPAMCAARIFQLTRELGHRSDGETIEWLLRHAEPSIIAATGSGTLPAEPISTTSPSVSSQMPSVPcrvqplkslR 152
                    67899*********************************************************999997776666666666555555555554431 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.5E-2961149IPR005333Transcription factor, TCP
PROSITE profilePS5136926.96362116IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MASEMALQPL HKLEDRKPTV LPTAVLTSAT IQTAPSLQHS QLSDLQLQAQ PKPQKQVSRR  60
NTRDRHTKVN GRGRRVRMPA MCAARIFQLT RELGHRSDGE TIEWLLRHAE PSIIAATGSG  120
TLPAEPISTT SPSVSSQMPS VPCRVQPLKS LRSSGQFLYP AAAQAHQAMQ LQLDLCQPMG  180
VDYNAGYRHM PFTSLLLQTG ESEVEEGQPE EEVVGVGIGD DE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008387577.11e-163PREDICTED: transcription factor TCP11
SwissprotQ9SJK72e-38TCP11_ARATH; Transcription factor TCP11
TrEMBLM5W5661e-81M5W566_PRUPE; Uncharacterized protein (Fragment)
STRINGVIT_08s0040g01600.t015e-54(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38193363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69690.17e-35TCP family protein